Tuesday ,16/08/2022
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HIVDR in India
HIVDR Surveillance and Monitoring
Mumbai transmitted HIVDR
Kakinada transmitted HIVDR
Chennai Mumbai HIVDR Monitoring
HIVDR in ARV treated patients
HIVDR in ARV Naive patients
HIVDR studies MTCT program
Sequence Submission
How to submit sequences
Submit Sequences
Blank file_Clinical Proforma template
Download
Tools
HIV Tools
Predicting HIV drug
resistance from genomic
datausing deep learning.
References
Links
India HIV Estimation
India HIV Estimations 2015
List of ART Centres
HIV Facts & Figures
Revised Guidelines on Initiation of ART
Journey of ART Programme in India
Tools:
1. jpHMM (jumping profile Hidden Markov Model) tool for the detection of genomic recombinations in HIV-1
2. HIV BLAST
3. RIP (Recombinant Identification Program)
4. FindModel (analyzes alignment sequences to see which phylogenetic model best describes your data)
5. PhyML interface (fast and accurate heuristic for estimating maximum likelihood phylogenies)
6. NCBI HIV-1 Subtyping tool
7. Genotype-Treatment Correlations
8. Genotype-Phenotype Correlations
9. Genotype-Clinical Outcome Correlations
10. HIV Drug Resistance Summaries
11. Syn-SCAN (synonymous and nonsynonmous mutation rates calculation)
12. HIV nucleotide and protein alignments
13. Subtype Reference Alignments
14. Compendium Alignments
15. Analysis & Detection of APOBEC-induced Hypermutation
16. HIV-1 Sequence Quality Control (QC)
17. SNAP (Synonymous Non-synonymous Analysis Program)
18. VESPA (Viral Epidemiology Signature Pattern Analysis)
19. Gene Cutter (Sequence Alignment and Protein Extraction)
20. HIV Sequence Locator
21. Format Converter (converts the sequence(s) to a different user-specified format)
22. SeqPublish (Sequence Alignment Publishing Tool)
23. HIV Treatment Websites
24. WHO(HIV-AIDS)
25. NIH AIDS Research and Reference Reagent Program
26. MEGA (a versatile, user-friendly program that does phylogenetic analysis and bootstrapping)
27. BioEdit (is a full-featured alignment editor for nucleotides and amino acids comes with built-in alignment and tree-building programs.)
28. Clustal: Multiple Sequence Alignment
29. Sequin (tools for sequence submission to GenBank (NCBI))
30. RECall (beta v2.10) - Web based sequence analysis
31. DataMonkey
32. Beast (Bayesian Evolutionary Analysis Sampling Trees)
33. REGA HIV Subtyping Tool
34. Geno2Pheno
35. NIH AIDS Reagent Program
30. The HIV Brain Sequence Database
Developed by -
NATH IT SOLUTION'S